Help for using BERMP

1. Input

The nucleotide sequence input to our server should be FASTA format.Only the four conventional nucleotide symbols are supported. A maximum of 100 nucleotide sequence are supported by BERMP at a time.

2. The select of prediction mode

BERMP provides two prediction modes, i.e. the full transcript mode and the mature mRNA mode. The two modes were employed for mammalian, whereas the mature mRNA mode only was used for Saccharomyces cerevisiae and Arabidopsis thaliana.

3. Output

The prediction output consists of four items:

  • Gene name
  • Position
  • Sequence context
  • Score
  • m6A site annotations

Who are using?